Index

B

buildDynamicsNetwork() (in module correlationplus.centralityAnalysis)

buildSequenceNetwork() (in module correlationplus.centralityAnalysis)

C

calcENM_LMI() (in module correlationplus.calculate) calcENMnDCC() (in module correlationplus.calculate) calcMD_LMI() (in module correlationplus.calculate) calcMDnDCC() (in module correlationplus.calculate) calcMDtlDCC() (in module correlationplus.calculate) calculateApp() (in module correlationplus.scripts.calculate) centralityAnalysis() (in module correlationplus.centralityAnalysis) centralityAnalysisApp() (in module correlationplus.scripts.analyze) cmap_discretize() (in module correlationplus.visualize) convertLMIdata2Matrix() (in module correlationplus.visualize) correlationplus module correlationplus.calculate module correlationplus.centralityAnalysis module

correlationplus.scripts module correlationplus.scripts.analyze module correlationplus.scripts.calculate module correlationplus.scripts.correlationplus module correlationplus.scripts.diffMap module correlationplus.scripts.visualize module correlationplus.visualize module

D

DCCmatrixCalculation() (in module correlationplus.calculate)

diffMapApp() (in module correlationplus.scripts.diffMap) distanceDistribution() (in module correlationplus.visualize)

F

filterCorrelationMapByDistance() (in module correlationplus.visualize)

findCommonCorePDB() (in module correlationplus.visualize)

G

generatePNG() (in module correlationplus.visualize)

H

handle_arguments_calculateApp() (in module correlationplus.scripts.calculate) handle_arguments_centralityAnalysisApp() (in module correlationplus.scripts.analyze)

handle_arguments_diffMaps() (in module correlationplus.scripts.diffMap) handle_arguments_visualizemapApp() (in module correlationplus.scripts.visualize)

I

interChainCorrelationMaps() (in module correlationplus.visualize)

intraChainCorrelationMaps() (in module correlationplus.visualize)

M

main() (in module correlationplus.scripts.correlationplus) module correlationplus correlationplus.calculate correlationplus.centralityAnalysis correlationplus.scripts correlationplus.scripts.analyze correlationplus.scripts.calculate correlationplus.scripts.correlationplus correlationplus.scripts.diffMap correlationplus.scripts.visualize correlationplus.visualize

O

overallCorrelationMap() (in module correlationplus.visualize)

overallNonUniformDifferenceMap() (in module correlationplus.visualize) overallUniformDifferenceMap() (in module correlationplus.visualize)

P

parseElasticityGraph() (in module correlationplus.visualize) parseEVcouplingsScores() (in module correlationplus.visualize) parseSparseCorrData() (in module correlationplus.visualize) plotCentralities() (in module correlationplus.centralityAnalysis) projectCentralitiesOntoProteinPyMol() (in module correlationplus.centralityAnalysis)

projectCentralitiesOntoProteinVMD() (in module correlationplus.centralityAnalysis) projectCommunitiesOntoProteinPyMol() (in module correlationplus.centralityAnalysis) projectCommunitiesOntoProteinVMD() (in module correlationplus.centralityAnalysis) projectCorrelationsOntoProteinPyMol() (in module correlationplus.visualize) projectCorrelationsOntoProteinVMD() (in module correlationplus.visualize)

T

timeLaggedDCCmatrixCalculation() (in module correlationplus.calculate)

triangulateMaps() (in module correlationplus.visualize)

U

usage_calculateApp() (in module correlationplus.scripts.calculate) usage_centralityAnalysisApp() (in module correlationplus.scripts.analyze)

usage_diffMaps() (in module correlationplus.scripts.diffMap) usage_main() (in module correlationplus.scripts.correlationplus) usage_visualizemapApp() (in module correlationplus.scripts.visualize)

V

visualizemapApp() (in module correlationplus.scripts.visualize)

W

writeSparseCorrData() (in module correlationplus.calculate)